well I didnt see any need to remove the lower intake. at least not until I went to put it all together and couldn't get the drain hose hooked up again! Ended up going to Lowes and buying a long pair of spring loaded needle nose pliers/cutters, reached down in and snagged it and forced it on. I ran the new ftb line up and around the side of the intake. I could have fed it under but I wanted room for my T for the fuel pressure gauge.
Got the air out of it, got it running, has ses light for a few minutes then that went away. Nothing appears to be leaking. I see 3 lbs of fuel pressure at idle, drops to zero if you romp on it. Couldn't really go for much of a test drive (watching the kids) but I parked the stroller on the front lawn and drove it around the cul-de-sac a couple times. Full throttle acceleration feels really good, too early to say if the high speed problem is solved. I notice I've got some lovely black smoke now. I thought it seemed lessened a little after installing the Kojo tune, but it's puffing pretty good now when you give it more throttle than you have forward momentum. So I'm feeling like at the very least I have plenty of fuel at my disposal.