So there are a few ways to do this but I'm with WAR , don't turn the engine over if the timing marks are not lined up . If you did lose the chain chances are the valves are bent . I would take the cam gear off , this drives the injection pump , and see where the " dots " are on the cam and crank gears . They don't have to be lined up but when the crank is straight up the cam needs to be at 6 or 12 o'clock . 6 is good as that will line up with the crank , 12 just means you have to rotate the engine 1 revolution to get dot to dot . Worry about the chain first and then the injection pump timing .