Probe ECM voltage. Why would it pop ECM fuses aka what else is on that fuse? Maybe it was fixed and high amp fuse left in. An amp meter in place of the fuse could indicate excessive current still going on causing a voltage drop to the ECM. It could be an intermittent short not getting the fuse hot enough to melt.
The alternator plug goes direct into the regulator. Magic Smoke from the regulator failing could leave a ring around the plug. Did any bulbs fail at the same time indicating a high voltage surge? Generally they would be silver colored on the envelope from high voltage flash off failure. If so the ECM could be damaged. Note: high voltage and static may not immediately kill electronics as they can act goofy till they fail completely. The charge in memory saying "1" can leak off through HV or static damage and become so low a voltage it is read as a "0" now and then. Heat and other factors increase the random occurrences of the misread bits.
Alternator failure can be from shorts or opens on the big battery/charging wire itself. Any wire upgrades for the high amp unit? An inspection and wiggle test of the fusible links on the alternator battery wire is in order. A loose connection that arcs at the lug can blow an alternator on either end of the cable. Melted or burned off insulation can be a random partial short that doesn't burn the fuses out, but, makes enough "noise" to confuse an ECM. Battery cables arcing to ground when a heat shield got hot near a knock sensor is an example I recall from a 454 motor home.
Choose now to check wiring with a fine tooth comb or get a scanner as your other throw parts at it choices are ECM or IP. Swapping an optical sensor is a blind guess if it doesn't cure the problem. (Did I screw the job up and cause another problem on top of an existing problem? A scanner will give you better clues. )
How does the clear return line look? Even with 2 PSI at WOT and Full RPM air will mess with things. Kinked hoses worse with engine movement come to mind.
The alternator plug goes direct into the regulator. Magic Smoke from the regulator failing could leave a ring around the plug. Did any bulbs fail at the same time indicating a high voltage surge? Generally they would be silver colored on the envelope from high voltage flash off failure. If so the ECM could be damaged. Note: high voltage and static may not immediately kill electronics as they can act goofy till they fail completely. The charge in memory saying "1" can leak off through HV or static damage and become so low a voltage it is read as a "0" now and then. Heat and other factors increase the random occurrences of the misread bits.
Alternator failure can be from shorts or opens on the big battery/charging wire itself. Any wire upgrades for the high amp unit? An inspection and wiggle test of the fusible links on the alternator battery wire is in order. A loose connection that arcs at the lug can blow an alternator on either end of the cable. Melted or burned off insulation can be a random partial short that doesn't burn the fuses out, but, makes enough "noise" to confuse an ECM. Battery cables arcing to ground when a heat shield got hot near a knock sensor is an example I recall from a 454 motor home.
Choose now to check wiring with a fine tooth comb or get a scanner as your other throw parts at it choices are ECM or IP. Swapping an optical sensor is a blind guess if it doesn't cure the problem. (Did I screw the job up and cause another problem on top of an existing problem? A scanner will give you better clues. )
How does the clear return line look? Even with 2 PSI at WOT and Full RPM air will mess with things. Kinked hoses worse with engine movement come to mind.
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