The truck is based in Washington and I just crew for it and get to help tinker a little when passing through on a detour from work. That year was the last year though as the owner, Bill Heath, saw the Diesel Truck class record get higher as it was taken by a Dodge and then a Ford...both prepped for the runs by factory teams. Bill's plan was to run as near stock as he could but, that's not going to get the job done now. Business kept him from working on it and bad weather the last few years has too often made the salt unsuitable with either too much water from late rains (this week is rained out) or the deteriorating salt surface makes for unsustainable racing conditions. But, to your questions...
After the Diesel Depot failure, he went back to the motor he'd built and run the year before but, he hadn't gotten it ready for 2009 (hence DD coming to the "Rescue" in 2009). Then the record started getting faster (IDI trucks currently have to compete with the Direct Injection/fuel rail set ups so until SCTA makes a split in the Diesel Truck Classification, he's @#$%^& for trying to set a record with a 6.5). Still, he's the fastest recorded 6.5....
I don't know what voodoo stuff he does or what DD did to that motor but, I do know on his own motors he does clean things up as you mentioned and ports the intake and exhaust runners. I know he did NOT knife edge the crank or thin the oil etc. In the year's since, he's worked with GEP on their Optimizer series and P-400 series motors and one thing led to another and he's got a couple of motors on stands waiting for mating to a 4L85. Only there's all electronics and body mods to the firewall and a business to run and no guarantee that there will be a surface to run on... He's parked it in storage for now and is considering putting his built up 6.5 (not the P-400) in his 60's step-bed for a return to drag racing. He used to run a big block gasser in it and its been long parked too so we'll see. They run their street 6.5 trucks out there on a local track in Yakima and have a pretty good time taking people's money. He built my motor as a favor after another DD #$%^&* up but that's a long story and even longer thread(s) for all my banter (sorry, its what I do).
Basically it went from this Diesel Depot custom build for member 635 in 2009...

...to junk from using a King bearing on #7 (Clevites on everything else)...
...to me buying the parts resulting in this by 2013.

Total of about 5 years and nobody wants to get out the calculator, trust me.